PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 230aa    MW: 26555 Da    PI: 9.7856
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.6e-16132222199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f +++  + +++ t+ l de+  +++  +    ++++  l++GW++F  a++L +gD +vF+l++r++f  +v
  LPERR06G05590.1 132 FIKPMLQSHVTGGFWLGLPTQFSRKYL-P-KRDETICLVDEEDDEFDTLY--LAHKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTRF--KV 217
                      89************************5.3.35669***************..677766..9************************99999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  LPERR06G05590.1 218 YIIRA 222
                      99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-24125223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-20125223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-25130221No hitNo description
PfamPF023622.4E-14132222IPR003340B3 DNA binding domain
SMARTSM010196.0E-19132223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADAASYEEQ RRRQVEENKR KLDELRLHQL SAAVRESGPR PSPVKPRKRK ERAAAGAGED  60
VPLRRSGRVA SLPEKPKYQD EFHDFERKIR RSYGGKRRNL SGRVYATEKE REHAIATAED  120
LEKELGSDHP IFIKPMLQSH VTGGFWLGLP TQFSRKYLPK RDETICLVDE EDDEFDTLYL  180
AHKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTRFKVYII RASSLYESDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656731.11e-142PREDICTED: B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-143Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0D9WMV91e-170A0A0D9WMV9_9ORYZ; Uncharacterized protein
STRINGOB06G15600.11e-141(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-58B3 family protein